https://www.patsnap.com/resources/blog/rd-blog/sequencing-flow-cells-and-surface-chemistry-patent-landscape/ · Patsnap · data cut-off 2026-07-31 · downloaded from the live page
Patent Landscape · Sequencing Flow Cells & Surface Chemistry
Sequencing flow cell and surface chemistry patents: mapping who controls cluster generation and imaging
  • 86.8% concentration. The top five assignees combined hold 2,067 of all 2,380 records in scope — filing here is not fragmented, it is a small group defending a large footprint.
  • Filings cooled from a 2020 peak. Activity peaked at 329 records in 2020 and fell -54% from 287 in 2021 to 133 in 2024, the last year with complete publication data.
  • C12Q dominates, but adjacent classes are thinner. 72.3% of records touch enzyme/DNA measurement (C12Q), while polymer chemistry (C08F) and combinatorial libraries (C40B) sit well under 10%.
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2,380
Published Records
87%
Top-5 Share of All Records
-54%
Filing Growth 2021→2024
US
Leading Jurisdiction

Filing growth compares 2021 (287 records) with 2024 (133) — a three-year span. 2024 is the most recent year we treat as complete: publication lags filing by roughly 18 months, so 2025 onwards are still filling in and any growth rate that ends there would understate the field. Top-5 share is the combined record count of the five largest assignees divided by all 2,380 records in scope (CR5), not by the ranked leaders only.

Published byPatsnap Research··7 min readSourced from Patsnap Eureka
Overview

What this landscape covers

This landscape tracks patent families addressing sequencing flow cell design and surface chemistry — the substrates, patterned nanowells, surface primers and reagent-flow mechanics that determine cluster density and imaging-cycle throughput on next-generation sequencing instruments. The scope spans 2,380 published records filed or published between 2015 and the 2026-07-31 cut-off, drawn from filings that combine flow-cell and cluster-generation language with surface-chemistry and imaging-cycle terms. Because publication lags filing by roughly 18 months, the most recent one to two years in any trend chart understate real filing activity.

The dataset is built around patent families rather than raw document counts, which discounts the effect of continuations and multi-jurisdiction refiling by the same underlying invention. That matters here because a small number of assignees hold outsized portfolios, and family-level counting keeps the concentration figures from being inflated by defensive re-filing in a single family.

Records in scope by publication year
  1. 1ILLUMINA INC1,163
  2. 2ILLUMINA CAMBRIDGE LTD529
  3. 3ELEMENT BIOSCIENCES INC193
  4. 4FOUNDATION MEDICINE INC97
  5. 5ILLUMINA SINGAPORE PTE LTD85
  6. 6CELLANOME INC52
  7. 7SINGULAR GENOMICS SYSTEMS INC49
  8. 8GENOMIC HEALTH INC38
  9. 910X GENOMICS SWEDEN AB33
  10. 10SPATIAL TRANSCRIPTOMICS AB33
Source: Patsnap Eureka. Assignee ranking and totals. Derived from a Patsnap search on Sequencing Flow Cells and Surface Chemistry covering 2015–2026, data cut-off 2026-07-31. Counts reflect published records only and shift as new filings publish.Run this in Eureka MCP

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The Data

Filing trend and technology composition

Two views of the same 2,380 records: how filing activity has moved year over year, and which IPC subclasses the claims actually sit in.

Filing activity, 2017–2026

Filings rose from 78 in 2017 to a peak of 329 in 2020, then declined -54% from 287 in 2021 to 133 in 2024 — the last year with complete publication data. 2025 and 2026 figures (13 in the most recent year) are still filling in and should not be read as a continued decline.

Filing activity, 2017–2026010020030040078201720182019329202020212022202320242025132026Most recent year is partial — publication lag means later filings are not yet visible.

IPC subclass composition

C12Q (measuring and testing involving enzymes/DNA) covers 72.3% of the 2,380 records, far ahead of C12N (16.1%), G16B bioinformatics (14.5%) and G01N material analysis (13.5%). Because records can carry multiple classes, these shares sum to well over 100% — B01L lab apparatus, B01J catalysis, C40B combinatorial libraries and C08F polymer chemistry each cover under 11% of records, marking them as narrower, more specialised claim territory.

IPC subclass compositionC12Q · Measuring & testing involving …1,72072.3%C12N · Microorganisms & genetic engin…38416.1%G16B · Bioinformatics34514.5%G01N · Material analysis & testing32213.5%B01L · Lab apparatus25710.8%B01J · Chemical/physical processes & …2309.7%C40B · Combinatorial chemistry librar…2008.4%C08F · Addition polymers (vinyl etc.)1616.8%Other1,33155.9%

Shares are the percentage of the 2,380 records in scope. A patent can carry several IPC classes, so the shares add up to more than 100%.

Source: Patsnap Eureka. Filing trend and technology composition. Derived from a Patsnap search on Sequencing Flow Cells and Surface Chemistry covering 2015–2026, data cut-off 2026-07-31. Counts reflect published records only and shift as new filings publish.

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Key Patents

Representative filing and most-cited prior art

Representative Record
US20200082908A12020-03-12

Methods for Optimizing Direct Targeted Sequencing (US20200082908A1)

MYRIAD WOMEN'S HEALTH, INC.

Filed by Myriad Women's Health, this record describes hybridizing capture probes to surface-bound oligonucleotides, extending them as a template, then hybridizing and amplifying sequencing-library molecules on that same surface — a workflow tuned around selecting critical parameters like library amount, capture-probe amount and amplification cycle count for direct targeted sequencing.Abstract trimmed for length; see the full record for complete claim language.

US20200082908A1 — patent drawing 1US20200082908A1 — patent drawing 2
View full record
Most-cited records in this landscape
#Publication no.Patent titleCitations
1US20130079232A1Methods and compositions for nucleic acid sequencing920
2US20140079923A1Polymer coatings577
3WO2012106546A2Massively parallel continguity mapping496
4US10774374B2Spatially distinguished, multiplex nucleic acid analysis of biological specimens477
5US20100069250A1Digital PCR Calibration for High Throughput Sequencing380
6US20120208706A1Optimization of multigene analysis of tumor samples372
7US20130338042A1Kinetic exclusion amplification of nucleic acid libraries346
8US20130203605A1Massively parallel contiguity mapping318
9WO2014108810A2Sample preparation on a solid support314
10US20080294651A1Drawing Device for Relationship Diagram of Documents Arranging the Documents in Chronolgical Order314

Citation counts reflect influence within the searched corpus and skew toward older filings; treat them as a signal of foundational status, not of current filing activity.

Each row carries its publication number; clicking a row searches Eureka by that number.

Source: Patsnap Eureka. Citation counts and representative records. Derived from a Patsnap search on Sequencing Flow Cells and Surface Chemistry covering 2015–2026, data cut-off 2026-07-31. Counts reflect published records only and shift as new filings publish.Run this in Eureka MCP
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Insights

What the numbers mean for filing strategy

Read together, the concentration, trend and composition data point to a field where core claim space is occupied but specific branches remain open.

Concentration
86.8%
of 2,380 records held by top 5 assignees

A small group controls the core

The leading assignee alone accounts for 1,163 records, and the top five combined reach 2,067 of 2,380 records in scope. Tenth place holds just 33 — the drop-off from leader to mid-table is steep, so any freedom-to-operate analysis has to start with the top handful of portfolios rather than a broad field scan.

Based on the full 100-company ranking returned for this dataset.
Momentum
-54%
filing change, 2021 to 2024

Activity has cooled from its 2020 peak

Filings peaked at 329 in 2020 and dropped from 287 in 2021 to 133 in 2024, the last year with complete data. That is a genuine pull-back in new filing rather than a data artefact, though 2025-2026 figures are still incomplete and should not be added to the trend.

2024 is treated as the most recent complete year; later years are still publishing.
Composition
72.3%
of records classed under C12Q

Enzyme/DNA measurement dominates the claim map

C12Q covers nearly three-quarters of records, while polymer chemistry (C08F, 6.8%) and combinatorial libraries (C40B, 8.4%) are comparatively thin. That gap is where surface-chemistry-specific claims — as opposed to sequencing-method claims — have more room to be drafted narrowly and still clear prior art.

Shares sum above 100% because records can carry multiple IPC classes.
Jurisdiction
563
US filings, the largest receiving office

Filing is US-centred with a strong PCT and European tail

The United States leads with 563 records, ahead of the EPO at 348 and WIPO/PCT at 252. Australia, Hong Kong and Israel each carry over 140 records, indicating deliberate multi-jurisdiction filing by the leading assignees rather than incidental overlap.

Counts are by receiving office, not by family.
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Looking for what nobody has claimed yet?

Eureka can read the same corpus for gaps instead of for coverage: under-claimed branches adjacent to sequencing flow cells and surface chemistry, with the prior art for and against each one.

Find the white space →
Source: Patsnap Eureka. Co-assignee relationships and derived observations. Derived from a Patsnap search on Sequencing Flow Cells and Surface Chemistry covering 2015–2026, data cut-off 2026-07-31. Counts reflect published records only and shift as new filings publish.Run this in Eureka MCP
Players

Who holds the ground, and where new entrants sit

Filing here is dominated by a cluster of related Illumina entities, with newer instrument makers and diagnostics companies filing at much lower volume.

Leader
1,163
records

The top assignee's footprint dwarfs the field

The leading assignee's 1,163 records make up roughly half of all 2,380 records in scope on its own, before counting affiliated entities that file under separate but related names — several of the strongest co-assignee pairings in this dataset link entities under the same corporate family.

Counted at the family level to discount continuation filings.
Momentum, latest year
-55% to -94% YoY
across tracked assignees

Even active filers are pulling back

Every assignee with recent-year momentum data shows a year-over-year decline — from -55% at one newer entrant down to -94% at a long-standing leader — consistent with the broader post-2021 slowdown rather than any single company exiting the space.

Latest-year counts are partial due to publication lag.
Long tail
33
records at 10th place

A steep drop-off past the leaders

Tenth place in the ranking holds only 33 records against a leader with 1,163, and the top ten combined reach 95.5% of all 2,380 records. What remains outside the top ten is a thin scatter of single- or few-filing entrants rather than a competitive mid-tier.

Ranking covers 100 companies, the full set the dataset returns.
🔍
Under-claimed branches worth a closer look
These sub-areas sit well below the 72.3% C12Q density and below the leading assignees' core claims — narrower filings here face less crowded prior art.
Patterned nanowell substrate coatingsSurface-primer regeneration chemistryPolyclonal cluster suppression methodsReagent-flow manifold designImaging-cycle synchronization hardware
Rank all filers by momentum →
Recent-year filing momentum by assignee
AssigneeRecent yearYoY
CELLANOME INC5-55%
Illumina, Inc.2-94%
Element Biosciences, Inc.2-89%
Illumina Cambridge Ltd.1-80%
Illumina Singapore Pte. Ltd.1-50%
Foundation Medicine, Inc.0
Spatial Transcriptomics AB0
Singular Genomics Systems, Inc.0-100%
Source: Patsnap Eureka. Assignee-level momentum. Derived from a Patsnap search on Sequencing Flow Cells and Surface Chemistry covering 2015–2026, data cut-off 2026-07-31. Counts reflect published records only and shift as new filings publish.Run this in Eureka MCP
What's Next

Where to take this analysis

The landscape data points to specific next steps depending on whether the goal is freedom-to-operate, portfolio benchmarking or identifying open claim space.

Run a freedom-to-operate check against the top holders

With 86.8% of records held by five assignees, any new surface-chemistry or cluster-generation filing should be checked against those portfolios first, not against the full field.

Explore assignee portfolios in Eureka

Track the post-2021 filing pull-back by sub-branch

The -54% drop from 2021 to 2024 is aggregate; breaking it down by IPC subclass shows whether the slowdown is uniform or concentrated in already-crowded C12Q claims.

Build a custom trend view in Eureka

Draft around the under-claimed branches

Reagent-flow manifold design and surface-primer regeneration sit below the density of core cluster-generation claims, and are worth scoping before committing to a filing strategy.

Search white space in Eureka
Source: Patsnap Eureka. Forward-looking reading of the same dataset. Derived from a Patsnap search on Sequencing Flow Cells and Surface Chemistry covering 2015–2026, data cut-off 2026-07-31. Counts reflect published records only and shift as new filings publish.Run this in Eureka MCP
FAQ

Common questions about this landscape

Answers are grounded in the same dataset. Derived from a Patsnap search on Sequencing Flow Cells and Surface Chemistry covering 2015–2026, data cut-off 2026-07-31. Counts reflect published records only and shift as new filings publish.Run this in Eureka MCP

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Disclaimer. This page is generated from Patsnap Eureka data drawn from a limited snapshot of global patent and scientific-literature records, and is provided for general information and reference only.

Patent data carries inherent limitations: recent filings (typically the most recent 18–24 months) are under-counted due to standard publication lag; counts may be reported at either a patent-family or a patent-record basis and are not always directly comparable; classification, applicant-name, and citation data may contain errors, duplicates, or omissions; and the underlying search query defines and constrains the scope shown. As a result, the analysis may be incomplete or inaccurate and may not reflect the full technology landscape.

Nothing on this page constitutes an exhaustive prior-art, novelty, freedom-to-operate, or validity search, nor does it constitute legal, financial, investment, or professional advice, and it should not be relied upon as such. Any patent, commercial, or strategic decision should be verified independently and reviewed with qualified patent, legal, and domain professionals. Patsnap makes no warranties, express or implied, as to the accuracy, completeness, or fitness for any particular purpose of the information presented.

Machine translation. Assignee and organisation names originally recorded in Chinese, Japanese or Korean have been rendered into English by an AI translation step so that the tables stay readable. These renderings are best-effort and may not match a company's registered English name; the original name is what the underlying patent record carries, and it is what any Eureka query launched from this page uses.